STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptALipopolysaccharide export system protein LptA precursor. (161 aa)    
Predicted Functional Partners:
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
  
 
 0.994
lptD
LPS-assembly protein LptD precursor; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
 0.987
OAH08260.1
Hypothetical protein.
 
  
 0.956
flgC
Flagellar basal-body rod protein FlgC.
    
   0.927
fliM
Flagellar motor switch protein FliM.
    
   0.832
rnd_2
Ribonuclease D.
       0.793
lptG
Lipopolysaccharide export system permease protein LptG.
    
 0.763
OAH06179.1
Putative permease YjgP/YjgQ family protein.
    
 0.740
OAH06614.1
Hypothetical protein.
    
   0.706
yvyD
Putative sigma-54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
     
 0.684
Your Current Organism:
Rhodobacteraceae bacterium SB2
NCBI taxonomy Id: 1689867
Other names: R. bacterium SB2
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