STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAN12802.1Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (543 aa)    
Predicted Functional Partners:
OAN10671.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.695
OAN15985.1
FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.658
OAN14502.1
GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.612
OAN15884.1
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.612
OAN10753.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.571
OAN15453.1
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.559
OAN12785.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.530
OAN12803.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.526
OAN12827.1
Xanthine permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.520
OAN12798.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.504
Your Current Organism:
Exiguobacterium undae
NCBI taxonomy Id: 169177
Other names: CCUG 47136, CIP 107162, DSM 14481, E. undae, Exiguobacterium sp. 190-11, Exiguobacterium undae Fruhling et al. 2002, strain L2
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