rnc protein (Bifidobacterium magnum) - STRING interaction network

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rnc

Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (269 aa)

Predicted Functional Partners:

rplS

0.995

rpmF

0.992

rplM

0.988

rplV

0.988

rpsO

0.986

rpmA

0.984

BMAGN_0292

0.983

rpsP

0.981

rplQ

0.981

rpsF

0.981

Your Current Organism:

Bifidobacterium magnum

NCBI taxonomy Id: 1692
Other names: AS 1.2189, ATCC 27540, B. magnum, BCRC 14676, CCRC 14676, CCRC:14676, CCUG 34987, DSM 20222, HAMBI 569, LMG 11591, LMG:11591

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMAGN_0292	rnc	BMAGN_0292	BMAGN_0155	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.983
BMAGN_0292	rplM	BMAGN_0292	BMAGN_0291	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
BMAGN_0292	rplQ	BMAGN_0292	BMAGN_0325	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L17.	0.999
BMAGN_0292	rplS	BMAGN_0292	BMAGN_0179	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.999
BMAGN_0292	rplV	BMAGN_0292	BMAGN_0302	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
BMAGN_0292	rpmA	BMAGN_0292	BMAGN_0192	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.999
BMAGN_0292	rpmF	BMAGN_0292	BMAGN_0156	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.999
BMAGN_0292	rpsF	BMAGN_0292	BMAGN_1226	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999
BMAGN_0292	rpsO	BMAGN_0292	BMAGN_0217	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
BMAGN_0292	rpsP	BMAGN_0292	BMAGN_0144	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rnc	BMAGN_0292	BMAGN_0155	BMAGN_0292	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.983
rnc	rplM	BMAGN_0155	BMAGN_0291	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.988
rnc	rplQ	BMAGN_0155	BMAGN_0325	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L17.	0.981
rnc	rplS	BMAGN_0155	BMAGN_0179	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.995
rnc	rplV	BMAGN_0155	BMAGN_0302	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.988
rnc	rpmA	BMAGN_0155	BMAGN_0192	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.984
rnc	rpmF	BMAGN_0155	BMAGN_0156	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.992
rnc	rpsF	BMAGN_0155	BMAGN_1226	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.981
rnc	rpsO	BMAGN_0155	BMAGN_0217	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.986
rnc	rpsP	BMAGN_0155	BMAGN_0144	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.981

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