STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMAGN_0701Phospholipase B-like protein. (450 aa)    
Predicted Functional Partners:
BMAGN_0703
Amino acid permease.
 
     0.608
BMAGN_0702
Aminopeptidase; Belongs to the peptidase C1 family.
    
 0.575
BMAGN_0647
Auxin efflux carrier family protein.
  
     0.564
BMAGN_0567
ATP-dependent RNA helicase.
   
 0.504
BMAGN_1105
Formyl-CoA transferase; Belongs to the CoA-transferase III family.
  
     0.493
BMAGN_1582
NADH-dependent flavin oxidoreductase.
    
 
 0.410
Your Current Organism:
Bifidobacterium magnum
NCBI taxonomy Id: 1692
Other names: AS 1.2189, ATCC 27540, B. magnum, BCRC 14676, CCRC 14676, CCRC:14676, CCUG 34987, DSM 20222, HAMBI 569, LMG 11591, LMG:11591
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.