STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMAGN_1042Putative virion core protein. (297 aa)    
Predicted Functional Partners:
BMAGN_1041
Hypothetical protein.
       0.604
BMAGN_1236
Zinc-ribbon domain protein.
 
     0.509
BMAGN_1043
Cytosine deaminase.
       0.497
BMAGN_1045
Phage shock protein A-like protein.
  
    0.468
BMAGN_1001
CHAP domain protein.
  
     0.441
BMAGN_0359
N-acetylmuramoyl-L-alanine amidase.
  
     0.435
BMAGN_1349
VanZ-like protein.
  
     0.430
BMAGN_1040
Hypothetical protein.
       0.421
BMAGN_0936
Alpha/beta hydrolase.
  
     0.413
Your Current Organism:
Bifidobacterium magnum
NCBI taxonomy Id: 1692
Other names: AS 1.2189, ATCC 27540, B. magnum, BCRC 14676, CCRC 14676, CCRC:14676, CCUG 34987, DSM 20222, HAMBI 569, LMG 11591, LMG:11591
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.