STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMAGN_1324Transcriptional regulator, DeoR family. (267 aa)    
Predicted Functional Partners:
BMAGN_1325
Galactose-1-phosphate uridylyltransferase.
 
     0.705
BMAGN_0338
Beta-glucoside PTS system EIIBCA.
  
  
 0.687
BMAGN_0695
L-2,3-butanediol dehydrogenase/acetoin reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.637
BMAGN_1326
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
     
 0.626
BMAGN_1254
Acetyltransferase, GNAT family.
  
 
   0.543
BMAGN_1323
Transpeptidase, penicillin-binding protein.
       0.498
BMAGN_0248
Acetytransferase.
    
   0.473
BMAGN_1303
Hypothetical protein.
  
 
 0.464
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
    
 0.453
rbsK
Ribokinase, PfkB family; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 
  0.437
Your Current Organism:
Bifidobacterium magnum
NCBI taxonomy Id: 1692
Other names: AS 1.2189, ATCC 27540, B. magnum, BCRC 14676, CCRC 14676, CCRC:14676, CCUG 34987, DSM 20222, HAMBI 569, LMG 11591, LMG:11591
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.