STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMAGN_1415dTDP-rhamnosyl transferase RfbF. (719 aa)    
Predicted Functional Partners:
BMAGN_1417
dTDP-rhamnosyl transferase RfbF.
 
  
 0.983
BMAGN_1416
Hypothetical protein.
 
     0.849
BMAGN_1419
UDP-galactopyranose mutase.
 
  
 0.824
BMAGN_1405
dTDP-rhamnosyl transferase RfbF.
 
  
 
0.702
BMAGN_1409
Polysaccharide pyruvyl transferase.
 
     0.624
BMAGN_1407
Teichoic acid exporter ABC transporter, permease.
  
  
 0.578
BMAGN_0416
Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase.
  
 
 0.531
BMAGN_0284
dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.501
BMAGN_1418
Glycosyl transferase family 2 protein.
 
  
  0.494
BMAGN_1414
Phosphoglycerol transferase.
       0.483
Your Current Organism:
Bifidobacterium magnum
NCBI taxonomy Id: 1692
Other names: AS 1.2189, ATCC 27540, B. magnum, BCRC 14676, CCRC 14676, CCRC:14676, CCUG 34987, DSM 20222, HAMBI 569, LMG 11591, LMG:11591
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