STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI40_3277ATP-dependent RNA helicase DbpA. (457 aa)    
Predicted Functional Partners:
AKI40_1630
Putative ATP-dependent helicase YejH.
   
 0.871
pnp
Polyribonucleotide nucleotidyltransferase.
  
 0.832
rplD
50S ribosomal protein L4.
   
 0.769
AKI40_0470
50S ribosomal protein L3.
   
 0.761
AKI40_4730
50S ribosomal protein L10.
   
 0.735
AKI40_4951
ATP synthase subunit beta.
    
 0.729
AKI40_4950
ATP synthase gamma chain.
    
 0.725
rpsC
30S ribosomal protein S3.
   
 0.709
AKI40_4949
ATP synthase subunit alpha.
   
 0.707
AKI40_0490
50S ribosomal protein L30.
   
 0.686
Your Current Organism:
Enterobacter sp. FY07
NCBI taxonomy Id: 1692238
Other names: E. sp. FY-07, Enterobacter sp. FY-07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.