KNY05389.1 protein (Microbacterium sp. GCS4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KNY05389.1

Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)

Predicted Functional Partners:

KNY05390.1

0.994

KNY06829.1

0.982

KNY08008.1

0.979

KNY06467.1

0.958

KNY05496.1

0.919

KNY05795.1

0.894

thiE

0.792

KNY05388.1

0.766

KNY07509.1

0.677

KNY05391.1

0.677

Your Current Organism:

Microbacterium sp. GCS4

NCBI taxonomy Id: 1692239
Other names: M. sp. GCS4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KNY05388.1	KNY05389.1	AKH00_13665	AKH00_13670	Side tail fiber protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
KNY05388.1	KNY05390.1	AKH00_13665	AKH00_13675	Side tail fiber protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
KNY05388.1	KNY05391.1	AKH00_13665	AKH00_13680	Side tail fiber protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
KNY05388.1	KNY05496.1	AKH00_13665	AKH00_13660	Side tail fiber protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
KNY05389.1	KNY05388.1	AKH00_13670	AKH00_13665	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Side tail fiber protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
KNY05389.1	KNY05390.1	AKH00_13670	AKH00_13675	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
KNY05389.1	KNY05391.1	AKH00_13670	AKH00_13680	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
KNY05389.1	KNY05496.1	AKH00_13670	AKH00_13660	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
KNY05389.1	KNY05795.1	AKH00_13670	AKH00_07955	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
KNY05389.1	KNY06467.1	AKH00_13670	AKH00_07950	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
KNY05389.1	KNY06829.1	AKH00_13670	AKH00_00310	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin biosynthesis protein BioC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
KNY05389.1	KNY07509.1	AKH00_13670	AKH00_04405	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.677
KNY05389.1	KNY08008.1	AKH00_13670	AKH00_00315	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
KNY05389.1	thiE	AKH00_13670	AKH00_11805	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.	0.792
KNY05390.1	KNY05388.1	AKH00_13675	AKH00_13665	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Side tail fiber protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
KNY05390.1	KNY05389.1	AKH00_13675	AKH00_13670	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
KNY05390.1	KNY05391.1	AKH00_13675	AKH00_13680	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
KNY05390.1	KNY05496.1	AKH00_13675	AKH00_13660	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
KNY05390.1	KNY05795.1	AKH00_13675	AKH00_07955	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
KNY05390.1	KNY06829.1	AKH00_13675	AKH00_00310	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin biosynthesis protein BioC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678