STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOC72377.1Arylmalonate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)    
Predicted Functional Partners:
KOC72378.1
X-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.846
KOC75710.1
X-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.657
KOC75955.1
Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.624
KOC72376.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.614
KOC75716.1
Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.584
KOC75709.1
Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.583
KOC72055.1
X-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.569
KOC72427.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.561
KOC73614.1
Catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.534
KOC73318.1
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.505
Your Current Organism:
Shinella sp. GWS1
NCBI taxonomy Id: 1692240
Other names: S. sp. GWS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.