STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMIN_0200NAD-dependent 4-hydroxybutyrate dehydrogenase. (379 aa)    
Predicted Functional Partners:
BMIN_0201
4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
  0.910
BMIN_0115
Aldehyde-alcohol dehydrogenase 2.
  0.899
BMIN_0257
Putative succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.755
BMIN_0109
aldH aldehyde dehydrogenase (NAD(P)).
 
 0.727
BMIN_0116
Bifunctional acetaldehyde-CoA/alcohol dehydrogenase.
 
 
0.720
BMIN_0203
Hydrolase.
 
  
  0.716
BMIN_0631
Phosphate acetyltransferase.
   
 
 0.711
BMIN_1421
Glycerol dehydrogenase.
  
 
 0.686
BMIN_0585
Glutamate synthase domain 2.
   
 
 0.665
BMIN_1235
(R,R)-butanediol dehydrogenase.
 
 
 0.657
Your Current Organism:
Bifidobacterium minimum
NCBI taxonomy Id: 1693
Other names: AS 1.2233, ATCC 27538, B. minimum, BCRC 14666, CCRC 14666, CCRC:14666, CCUG 34982, DSM 20102, JCM 5821, LMG 11592, LMG:11592
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