STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMIN_0257Putative succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (470 aa)    
Predicted Functional Partners:
BMIN_0201
4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.892
BMIN_0161
Glucose-specific II BC.
   
 
 0.861
BMIN_0585
Glutamate synthase domain 2.
  
 
 0.855
BMIN_0275
Citrate synthase 1; Belongs to the citrate synthase family.
  
 0.818
BMIN_0657
Succinate dehydrogenase flavoprotein subunit.
   
 0.775
BMIN_0200
NAD-dependent 4-hydroxybutyrate dehydrogenase.
 
 0.755
BMIN_0427
Allophanate hydrolase.
   
 
 0.742
pxpA
Hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
   
 
  0.723
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
 
 0.716
BMIN_0631
Phosphate acetyltransferase.
  
 
 0.709
Your Current Organism:
Bifidobacterium minimum
NCBI taxonomy Id: 1693
Other names: AS 1.2233, ATCC 27538, B. minimum, BCRC 14666, CCRC 14666, CCRC:14666, CCUG 34982, DSM 20102, JCM 5821, LMG 11592, LMG:11592
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