STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMIN_0359Putative proteasome component. (514 aa)    
Predicted Functional Partners:
BMIN_0355
Proteasome ATPase.
 
  
 0.963
BMIN_0358
Hypothetical protein; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. Belongs to the prokaryotic ubiquitin-like protein family.
       0.773
BMIN_0739
Hypothetical protein.
  
     0.705
BMIN_0356
Proteasome accessory factor PafA2.
 
    
0.684
BMIN_1025
Regulatory protein containing IclR domain.
  
     0.665
BMIN_1510
dTDP-4-dehydrorhamnose reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
    
  0.647
BMIN_0357
Inositol-1-monophosphatase.
       0.646
BMIN_0805
Superfamily I DNA and RNA helicase.
  
     0.626
BMIN_0382
UspA domain protein.
  
     0.601
whiB
WhmD; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.571
Your Current Organism:
Bifidobacterium minimum
NCBI taxonomy Id: 1693
Other names: AS 1.2233, ATCC 27538, B. minimum, BCRC 14666, CCRC 14666, CCRC:14666, CCUG 34982, DSM 20102, JCM 5821, LMG 11592, LMG:11592
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