STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMIN_0471ComE operon protein 3. (547 aa)    
Predicted Functional Partners:
BMIN_0470
Competence protein ComEA.
 
  
 0.783
BMIN_0472
DNA-directed DNA polymerase III delta subunit.
   
 0.782
tsaD
Putative DNA-binding/iron metalloprotein/AP endonuclease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
    0.578
BMIN_0473
Putative ATP-binding protein.
       0.572
BMIN_0474
Glycoprotease protein family.
       0.572
BMIN_0475
Ribosomal-protein-alanine acetyltransferase.
       0.572
BMIN_0655
Putative DNA protecting protein DprA.
 
  
 0.571
BMIN_1379
Amidophosphoribosyl transferase-like protein.
 
  
 0.568
BMIN_0467
Putative magnesium and cobalt transport protein.
 
     0.502
BMIN_0654
Mg chelatase-like protein.
 
  
 0.483
Your Current Organism:
Bifidobacterium minimum
NCBI taxonomy Id: 1693
Other names: AS 1.2233, ATCC 27538, B. minimum, BCRC 14666, CCRC 14666, CCRC:14666, CCUG 34982, DSM 20102, JCM 5821, LMG 11592, LMG:11592
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