STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMIN_0486Glutamate ABC transporter permease. (299 aa)    
Predicted Functional Partners:
BMIN_0483
Glutamate transport ATP-binding protein.
 
 0.999
BMIN_0484
Glutamate-binding protein gluB.
 
 0.996
BMIN_0485
Amino acid ABC transporter permease.
 
0.994
BMIN_0468
Glutamate-binding protein.
 
 0.981
BMIN_0686
Glutamine ABC transporter, ATP-binding protein.
 
 0.980
BMIN_0286
Amino acid ABC transporter, ATP-binding protein.
 
 0.966
BMIN_1269
Extracellular solute-binding protein.
 
 0.912
BMIN_0685
ABC transporter substrate-binding protein.
 0.851
BMIN_0284
ABC transporter, substrate-binding protein.
  
  0.820
BMIN_1270
Glutamine-binding periplasmic protein.
 
 
0.765
Your Current Organism:
Bifidobacterium minimum
NCBI taxonomy Id: 1693
Other names: AS 1.2233, ATCC 27538, B. minimum, BCRC 14666, CCRC 14666, CCRC:14666, CCUG 34982, DSM 20102, JCM 5821, LMG 11592, LMG:11592
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