STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMIN_0683Aminoglycoside phosphotransferase. (475 aa)    
Predicted Functional Partners:
BMIN_0682
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
    0.859
BMIN_0167
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  0.789
BMIN_0300
Cystathionine beta-synthase.
    
  0.669
BMIN_0036
Homoserine dehydrogenase.
    
 0.557
BMIN_0443
Threonine synthase.
    
 0.502
BMIN_0662
Aspartate aminotransferase.
   
 
  0.500
BMIN_0201
4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  0.452
BMIN_1258
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  0.414
BMIN_0651
O-acetylhomoserine (thiol)-lyase.
    
  0.408
BMIN_0725
Cys/Met metabolism PLP-dependent enzyme.
    
  0.408
Your Current Organism:
Bifidobacterium minimum
NCBI taxonomy Id: 1693
Other names: AS 1.2233, ATCC 27538, B. minimum, BCRC 14666, CCRC 14666, CCRC:14666, CCUG 34982, DSM 20102, JCM 5821, LMG 11592, LMG:11592
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