STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMIN_0748Hydrolase. (580 aa)    
Predicted Functional Partners:
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.807
BMIN_0750
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.807
BMIN_0744
DivIVA domain repeat protein.
 
     0.752
BMIN_0026
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit.
  
     0.746
BMIN_0786
Hypothetical protein.
  
     0.731
BMIN_0361
Hypothetical protein.
  
     0.713
BMIN_0156
Hypothetical protein.
  
     0.694
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.686
BMIN_0041
ABC transporter permease.
  
     0.684
BMIN_1355
Hypothetical protein.
 
    0.655
Your Current Organism:
Bifidobacterium minimum
NCBI taxonomy Id: 1693
Other names: AS 1.2233, ATCC 27538, B. minimum, BCRC 14666, CCRC 14666, CCRC:14666, CCUG 34982, DSM 20102, JCM 5821, LMG 11592, LMG:11592
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