STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMIN_0895Penicillin-binding protein. (718 aa)    
Predicted Functional Partners:
BMIN_1284
Penicillin binding protein transpeptidase.
 
 
 0.887
BMIN_0809
Peptidoglycan glycosyltransferase.
 
 
 0.875
BMIN_0897
Global nitrogen regulator NtcA.
 
     0.710
BMIN_0815
Protein FtsW-like; Belongs to the SEDS family.
  
 
 
 0.709
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
   
 0.700
BMIN_0894
NADH-dependent flavin oxidoreductase.
       0.651
BMIN_0898
Biotin/lipoate A/B protein ligase.
       0.626
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.562
BMIN_1479
Orotate phosphoribosyltransferase PyrE.
  
     0.558
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
   
 0.547
Your Current Organism:
Bifidobacterium minimum
NCBI taxonomy Id: 1693
Other names: AS 1.2233, ATCC 27538, B. minimum, BCRC 14666, CCRC 14666, CCRC:14666, CCUG 34982, DSM 20102, JCM 5821, LMG 11592, LMG:11592
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