STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ39822.1Glycosyltransferase involved in cell wall bisynthesis. (404 aa)    
Predicted Functional Partners:
SHJ60754.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.760
SHJ89718.1
Undecaprenyl-phosphate glucose phosphotransferase.
 
  
 0.671
SHJ96838.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
  
 0.665
SHJ60914.1
Undecaprenyl-phosphate glucose phosphotransferase.
 
  
 0.663
SHJ80454.1
Undecaprenyl-phosphate glucose phosphotransferase.
 
  
 0.662
SHJ34278.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
  
 0.656
SHJ39780.1
HTH-type transcriptional regulator / antitoxin HigA.
 
     0.493
SHJ39805.1
mRNA interferase HigB.
 
     0.492
TreZ
Maltooligosyl trehalose hydrolase.
   
 0.480
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.480
Your Current Organism:
Paraburkholderia terricola
NCBI taxonomy Id: 169427
Other names: Burkholderia sp. LMG 20574, Burkholderia terricola, Burkholderia terricola Goris et al. 2003, CCM 7153, CCUG 44527, CIP 107794, DSM 17221, LMG 20594, LMG:20594, P. terricola, Paraburkholderia terricola (Goris et al. 2003) Sawana et al. 2015, strain R-8118
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