STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ56921.1Multiple sugar transport system permease protein. (384 aa)    
Predicted Functional Partners:
SHJ56940.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 
 0.969
SHJ56969.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 
 
 0.963
SHJ56905.1
Multiple sugar transport system substrate-binding protein.
 
 
 0.961
SHJ56637.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 
 0.870
SHJ96126.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 
 0.870
SHK46222.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 
 0.869
SHJ90760.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 
 0.858
SHK98481.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 
 0.857
ugpE
Glycerol 3-phosphate ABC transporter membrane protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 
 0.855
SHJ43796.1
Sorbitol ABC transporter membrane protein.
 
 
 0.852
Your Current Organism:
Paraburkholderia terricola
NCBI taxonomy Id: 169427
Other names: Burkholderia sp. LMG 20574, Burkholderia terricola, Burkholderia terricola Goris et al. 2003, CCM 7153, CCUG 44527, CIP 107794, DSM 17221, LMG 20594, LMG:20594, P. terricola, Paraburkholderia terricola (Goris et al. 2003) Sawana et al. 2015, strain R-8118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.