STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ61551.1Autotransporter adhesin. (1002 aa)    
Predicted Functional Partners:
SHK69119.1
Hypothetical protein.
  
     0.482
SHJ91287.1
FimV C-terminal domain-containing protein.
  
     0.470
SHL17680.1
Hypothetical protein.
  
     0.461
SHK89981.1
Type IV pilus assembly protein PilM.
  
     0.458
SHK97298.1
Hypothetical protein.
  
     0.457
SHK73621.1
OmpA family protein.
 
   
 0.456
SHJ81107.1
Type IV pilus assembly protein PilW.
  
     0.423
SHJ40519.1
Type IV secretion system protein VirB8.
  
     0.418
SHK69294.1
Putative membrane protein.
  
     0.418
SHL17565.1
Type IV secretion system protein VirB8.
  
     0.408
Your Current Organism:
Paraburkholderia terricola
NCBI taxonomy Id: 169427
Other names: Burkholderia sp. LMG 20574, Burkholderia terricola, Burkholderia terricola Goris et al. 2003, CCM 7153, CCUG 44527, CIP 107794, DSM 17221, LMG 20594, LMG:20594, P. terricola, Paraburkholderia terricola (Goris et al. 2003) Sawana et al. 2015, strain R-8118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.