node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PetA | SHJ76353.1 | SAMN05192548_103037 | SAMN05192548_100676 | Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module. | 0.545 |
PetA | SHK63276.1 | SAMN05192548_103037 | SAMN05192548_103040 | Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | RNA polymerase-associated protein. | 0.661 |
PetA | SHK63986.1 | SAMN05192548_103037 | SAMN05192548_103075 | Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase. | 0.450 |
PetA | bioC | SAMN05192548_103037 | SAMN05192548_101482 | Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | malonyl-CoA O-methyltransferase; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. | 0.424 |
PetA | ubiG | SAMN05192548_103037 | SAMN05192548_1002247 | Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.562 |
SHJ76353.1 | PetA | SAMN05192548_100676 | SAMN05192548_103037 | Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module. | Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.545 |
SHJ76353.1 | SHJ76363.1 | SAMN05192548_100676 | SAMN05192548_100677 | Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module. | Hypothetical protein; Belongs to the UPF0125 (RnfH) family. | 0.911 |
SHJ76353.1 | SHK05101.1 | SAMN05192548_100676 | SAMN05192548_101287 | Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module. | 2-octaprenyl-6-methoxyphenol hydroxylase. | 0.501 |
SHJ76353.1 | SHK63276.1 | SAMN05192548_100676 | SAMN05192548_103040 | Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module. | RNA polymerase-associated protein. | 0.626 |
SHJ76353.1 | SHK63986.1 | SAMN05192548_100676 | SAMN05192548_103075 | Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module. | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase. | 0.642 |
SHJ76353.1 | bioC | SAMN05192548_100676 | SAMN05192548_101482 | Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module. | malonyl-CoA O-methyltransferase; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. | 0.541 |
SHJ76353.1 | dnaQ | SAMN05192548_100676 | SAMN05192548_103319 | Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module. | DNA polymerase-3 subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.494 |
SHJ76353.1 | secB | SAMN05192548_100676 | SAMN05192548_101477 | Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module. | Protein translocase subunit secB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.468 |
SHJ76353.1 | smpB | SAMN05192548_100676 | SAMN05192548_100675 | Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.601 |
SHJ76353.1 | ubiG | SAMN05192548_100676 | SAMN05192548_1002247 | Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module. | 3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.699 |
SHJ76363.1 | SHJ76353.1 | SAMN05192548_100677 | SAMN05192548_100676 | Hypothetical protein; Belongs to the UPF0125 (RnfH) family. | Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module. | 0.911 |
SHJ76363.1 | smpB | SAMN05192548_100677 | SAMN05192548_100675 | Hypothetical protein; Belongs to the UPF0125 (RnfH) family. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.591 |
SHJ76363.1 | ubiG | SAMN05192548_100677 | SAMN05192548_1002247 | Hypothetical protein; Belongs to the UPF0125 (RnfH) family. | 3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.400 |
SHK05101.1 | SHJ76353.1 | SAMN05192548_101287 | SAMN05192548_100676 | 2-octaprenyl-6-methoxyphenol hydroxylase. | Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module. | 0.501 |
SHK05101.1 | bioC | SAMN05192548_101287 | SAMN05192548_101482 | 2-octaprenyl-6-methoxyphenol hydroxylase. | malonyl-CoA O-methyltransferase; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. | 0.645 |