STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ94399.1NitT/TauT family transport system substrate-binding protein. (346 aa)    
Predicted Functional Partners:
SHJ94508.1
NitT/TauT family transport system permease protein.
 
  
 0.876
SHJ94483.1
NitT/TauT family transport system ATP-binding protein.
 
  
 0.861
SHJ37558.1
NitT/TauT family transport system permease protein.
 
  
 0.811
SHJ37582.1
NitT/TauT family transport system ATP-binding protein.
 
  
 0.769
SHJ94422.1
Histidine kinase.
 
     0.641
SHK47099.1
NitT/TauT family transport system permease protein.
 
  
 0.603
SHJ94438.1
Two component transcriptional regulator, winged helix family.
       0.590
SHK34424.1
Bacteriophage N adsorption protein A C-term.
  
     0.584
SHL13683.1
NitT/TauT family transport system permease protein.
 
  
 0.573
SHK01429.1
NitT/TauT family transport system permease protein.
 
  
 0.523
Your Current Organism:
Paraburkholderia terricola
NCBI taxonomy Id: 169427
Other names: Burkholderia sp. LMG 20574, Burkholderia terricola, Burkholderia terricola Goris et al. 2003, CCM 7153, CCUG 44527, CIP 107794, DSM 17221, LMG 20594, LMG:20594, P. terricola, Paraburkholderia terricola (Goris et al. 2003) Sawana et al. 2015, strain R-8118
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