Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CobJ | SHK01543.1 | SAMN05192548_101818 | SAMN05192548_1011168 | Precorrin-3 methyltransferase. | Nitroreductase. | 0.453 |
SHJ95706.1 | SHK01543.1 | SAMN05192548_1010100 | SAMN05192548_1011168 | Catechol 2,3-dioxygenase. | Nitroreductase. | 0.457 |
SHK01506.1 | SHK01531.1 | SAMN05192548_1011166 | SAMN05192548_1011167 | NADPH:quinone reductase. | fatty-acyl-CoA synthase. | 0.495 |
SHK01506.1 | SHK01543.1 | SAMN05192548_1011166 | SAMN05192548_1011168 | NADPH:quinone reductase. | Nitroreductase. | 0.475 |
SHK01506.1 | SHL09989.1 | SAMN05192548_1011166 | SAMN05192548_106014 | NADPH:quinone reductase. | Predicted kinase, aminoglycoside phosphotransferase (APT) family. | 0.643 |
SHK01531.1 | SHK01506.1 | SAMN05192548_1011167 | SAMN05192548_1011166 | fatty-acyl-CoA synthase. | NADPH:quinone reductase. | 0.495 |
SHK01531.1 | SHK01543.1 | SAMN05192548_1011167 | SAMN05192548_1011168 | fatty-acyl-CoA synthase. | Nitroreductase. | 0.789 |
SHK01531.1 | SHK01564.1 | SAMN05192548_1011167 | SAMN05192548_1011169 | fatty-acyl-CoA synthase. | MFS transporter, AAHS family, benzoate transport protein. | 0.486 |
SHK01543.1 | CobJ | SAMN05192548_1011168 | SAMN05192548_101818 | Nitroreductase. | Precorrin-3 methyltransferase. | 0.453 |
SHK01543.1 | SHJ95706.1 | SAMN05192548_1011168 | SAMN05192548_1010100 | Nitroreductase. | Catechol 2,3-dioxygenase. | 0.457 |
SHK01543.1 | SHK01506.1 | SAMN05192548_1011168 | SAMN05192548_1011166 | Nitroreductase. | NADPH:quinone reductase. | 0.475 |
SHK01543.1 | SHK01531.1 | SAMN05192548_1011168 | SAMN05192548_1011167 | Nitroreductase. | fatty-acyl-CoA synthase. | 0.789 |
SHK01543.1 | SHK01564.1 | SAMN05192548_1011168 | SAMN05192548_1011169 | Nitroreductase. | MFS transporter, AAHS family, benzoate transport protein. | 0.576 |
SHK01543.1 | SHK07928.1 | SAMN05192548_1011168 | SAMN05192548_10134 | Nitroreductase. | Ribosomal protein S12 methylthiotransferase accessory factor. | 0.560 |
SHK01543.1 | SHK49351.1 | SAMN05192548_1011168 | SAMN05192548_102463 | Nitroreductase. | Hypothetical protein. | 0.487 |
SHK01543.1 | SHL09989.1 | SAMN05192548_1011168 | SAMN05192548_106014 | Nitroreductase. | Predicted kinase, aminoglycoside phosphotransferase (APT) family. | 0.435 |
SHK01543.1 | SHL10093.1 | SAMN05192548_1011168 | SAMN05192548_106019 | Nitroreductase. | Hypothetical protein. | 0.436 |
SHK01543.1 | SHL10111.1 | SAMN05192548_1011168 | SAMN05192548_106020 | Nitroreductase. | Hypothetical protein. | 0.495 |
SHK01564.1 | SHK01531.1 | SAMN05192548_1011169 | SAMN05192548_1011167 | MFS transporter, AAHS family, benzoate transport protein. | fatty-acyl-CoA synthase. | 0.486 |
SHK01564.1 | SHK01543.1 | SAMN05192548_1011169 | SAMN05192548_1011168 | MFS transporter, AAHS family, benzoate transport protein. | Nitroreductase. | 0.576 |
page 1 of 2