STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK10953.1acetyl-CoA synthetase. (563 aa)    
Predicted Functional Partners:
MmsA-3
Methylmalonate-semialdehyde dehydrogenase [acylating].
  
 0.968
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
   
 0.939
SHJ44883.1
Citrate synthase.
  
 0.939
SHJ75149.1
Malate synthase; Belongs to the malate synthase family.
   
 0.939
SHJ90295.1
2-methylcitrate synthase; Belongs to the citrate synthase family.
  
 0.939
GltA
Citrate synthase; Belongs to the citrate synthase family.
  
 0.939
SHK73756.1
2-methylcitrate synthase; Belongs to the citrate synthase family.
  
 0.939
SHK44115.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.933
SHK93764.1
succinyl-CoA:acetate CoA-transferase.
  
 0.928
SHJ37215.1
acetyl-CoA acetyltransferase /3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.926
Your Current Organism:
Paraburkholderia terricola
NCBI taxonomy Id: 169427
Other names: Burkholderia sp. LMG 20574, Burkholderia terricola, Burkholderia terricola Goris et al. 2003, CCM 7153, CCUG 44527, CIP 107794, DSM 17221, LMG 20594, LMG:20594, P. terricola, Paraburkholderia terricola (Goris et al. 2003) Sawana et al. 2015, strain R-8118
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