STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK38284.1Protein of unknown function. (251 aa)    
Predicted Functional Partners:
SHK38221.1
Protein of unknown function.
 
     0.950
SHK38267.1
Protein of unknown function.
 
     0.950
SHK38245.1
Flagellar motor protein MotB.
 
     0.948
SHL12834.1
DNA-binding protein; Belongs to the bacterial histone-like protein family.
  
     0.671
SHJ75128.1
Uncharacterized conserved protein YtfP, gamma-glutamylcyclotransferase (GGCT)/AIG2-like family.
  
     0.602
SHK71038.1
Histone H1-like nucleoprotein HC2.
  
     0.590
SHK54056.1
Membrane protein DedA, SNARE-associated domain.
  
     0.505
SHK61472.1
Type VI secretion system protein ImpM.
  
     0.504
SHK04663.1
Fatty acid desaturase.
  
     0.500
SHJ46296.1
Protein of unknown function.
  
     0.499
Your Current Organism:
Paraburkholderia terricola
NCBI taxonomy Id: 169427
Other names: Burkholderia sp. LMG 20574, Burkholderia terricola, Burkholderia terricola Goris et al. 2003, CCM 7153, CCUG 44527, CIP 107794, DSM 17221, LMG 20594, LMG:20594, P. terricola, Paraburkholderia terricola (Goris et al. 2003) Sawana et al. 2015, strain R-8118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.