STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK63436.1Methyltransferase domain-containing protein. (280 aa)    
Predicted Functional Partners:
CobJ
Precorrin-3 methyltransferase.
  
  
 0.913
CobM
Precorrin-4 C11-methyltransferase /precorrin-2 C20-methyltransferase.
  
  
 0.706
SHK29442.1
precorrin-8X methylmutase.
  
  
 0.703
SHK29465.1
Precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase; Methylates precorrin-2 at the C-20 position to produce precorrin-3A.
  
  
 0.674
cbiD
cobalt-precorrin-5B (C1)-methyltransferase; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
  
  
 0.615
SHK29349.1
precorrin-6A reductase.
  
  
 0.540
SHK88773.1
Conserved hypothetical protein, PP_1857 family.
  
     0.523
cobQ
Adenosylcobyric acid synthase (glutamine-hydrolysing); Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.503
SHJ49183.1
Uncharacterized integral membrane protein.
  
     0.451
SHK34053.1
Uncharacterized membrane protein.
  
     0.439
Your Current Organism:
Paraburkholderia terricola
NCBI taxonomy Id: 169427
Other names: Burkholderia sp. LMG 20574, Burkholderia terricola, Burkholderia terricola Goris et al. 2003, CCM 7153, CCUG 44527, CIP 107794, DSM 17221, LMG 20594, LMG:20594, P. terricola, Paraburkholderia terricola (Goris et al. 2003) Sawana et al. 2015, strain R-8118
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