STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK89811.1Outer membrane protein. (241 aa)    
Predicted Functional Partners:
HemN
Coproporphyrinogen III oxidase, anaerobic; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.671
SHJ46296.1
Protein of unknown function.
  
     0.653
SHK73739.1
Hypothetical protein.
  
     0.620
SHK19359.1
Hypothetical protein.
  
  
 0.613
SHK04068.1
SnoaL-like domain-containing protein.
  
     0.582
SHJ71432.1
ATP synthase protein I.
  
     0.576
SHK88462.1
Anti sigma-E protein, RseA.
  
   
 0.552
SHJ63539.1
Hypothetical protein.
 
     0.519
SHK89787.1
Putative transposase.
       0.512
SHK04663.1
Fatty acid desaturase.
  
     0.507
Your Current Organism:
Paraburkholderia terricola
NCBI taxonomy Id: 169427
Other names: Burkholderia sp. LMG 20574, Burkholderia terricola, Burkholderia terricola Goris et al. 2003, CCM 7153, CCUG 44527, CIP 107794, DSM 17221, LMG 20594, LMG:20594, P. terricola, Paraburkholderia terricola (Goris et al. 2003) Sawana et al. 2015, strain R-8118
Server load: low (22%) [HD]