STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK97984.1Transcriptional regulator, AraC family. (255 aa)    
Predicted Functional Partners:
SHK97996.1
Hypothetical protein.
       0.772
SHK97884.1
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
     0.706
SHJ96730.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.626
SHK46093.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.618
SHJ97149.1
Transcriptional regulator, AraC family with amidase-like domain.
  
   0.607
SHJ96849.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.602
SHK97955.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 
     0.595
SHK34604.1
Transcriptional regulator, AraC family with amidase-like domain.
  
   0.587
SHK43886.1
AraC-type DNA-binding protein.
  
     0.572
SHK97907.1
Glycine/D-amino acid oxidase.
 
     0.563
Your Current Organism:
Paraburkholderia terricola
NCBI taxonomy Id: 169427
Other names: Burkholderia sp. LMG 20574, Burkholderia terricola, Burkholderia terricola Goris et al. 2003, CCM 7153, CCUG 44527, CIP 107794, DSM 17221, LMG 20594, LMG:20594, P. terricola, Paraburkholderia terricola (Goris et al. 2003) Sawana et al. 2015, strain R-8118
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