STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL00403.1Putative spermidine/putrescine transport system permease protein. (309 aa)    
Predicted Functional Partners:
SHL00357.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.960
SHL00338.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
     0.883
SHL00379.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
    
0.847
SHK59252.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.730
SHJ99089.1
Putative spermidine/putrescine transport system permease protein.
 
  
 0.727
SHK46364.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.703
SHJ78592.1
Putrescine transport system permease protein.
 
  
 0.685
SHK77312.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.676
SHK15265.1
Putative spermidine/putrescine transport system permease protein.
 
  
 0.667
potA-3
Putative spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  
 0.643
Your Current Organism:
Paraburkholderia terricola
NCBI taxonomy Id: 169427
Other names: Burkholderia sp. LMG 20574, Burkholderia terricola, Burkholderia terricola Goris et al. 2003, CCM 7153, CCUG 44527, CIP 107794, DSM 17221, LMG 20594, LMG:20594, P. terricola, Paraburkholderia terricola (Goris et al. 2003) Sawana et al. 2015, strain R-8118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.