STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL22051.1Hypothetical protein. (405 aa)    
Predicted Functional Partners:
SHL22036.1
Hypothetical protein.
       0.727
SHJ35644.1
Hypothetical protein.
  
     0.626
SHJ35683.1
Hypothetical protein.
  
     0.623
SHJ35620.1
GAF domain-containing protein.
  
     0.618
SHJ35660.1
Tetratricopeptide repeat-containing protein.
  
     0.609
SHJ35533.1
Extracellular protein.
  
     0.603
SHJ70911.1
Hypothetical protein.
   
 
 0.581
SHJ35598.1
Hypothetical protein.
  
   
 0.575
SHK80995.1
Amidohydrolase.
  
   
 0.572
SHK81014.1
Hypothetical protein.
  
    0.557
Your Current Organism:
Paraburkholderia terricola
NCBI taxonomy Id: 169427
Other names: Burkholderia sp. LMG 20574, Burkholderia terricola, Burkholderia terricola Goris et al. 2003, CCM 7153, CCUG 44527, CIP 107794, DSM 17221, LMG 20594, LMG:20594, P. terricola, Paraburkholderia terricola (Goris et al. 2003) Sawana et al. 2015, strain R-8118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.