STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH41060.1TrfA protein. (305 aa)    
Predicted Functional Partners:
IolB
5-deoxyglucuronate isomerase.
  
    0.684
SEH78902.1
Sugar phosphate isomerase/epimerase.
  
    0.623
SEH89199.1
Single-strand DNA-binding protein.
 
    0.495
MadL
Malonate transporter, MadL subunit.
  
     0.495
SEI19108.1
Acyl-CoA dehydrogenase.
  
     0.489
SEH92512.1
cysteinyl-tRNA synthetase, unknown class.
  
     0.461
IolC
5-dehydro-2-deoxygluconokinase.
  
    0.459
SEI19101.1
Acyl-CoA dehydrogenase.
  
     0.452
MadM
Malonate transporter, MadM subunit.
  
     0.450
SEI25876.1
LysR family transcriptional regulator, malonate utilization transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.438
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.