Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LpdA | LpdA-2 | SAMN05192544_1011209 | SAMN05192544_105223 | Dihydrolipoamide dehydrogenase. | Dihydrolipoamide dehydrogenase. | 0.983 |
LpdA | LpdA-3 | SAMN05192544_1011209 | SAMN05192544_107031 | Dihydrolipoamide dehydrogenase. | Dihydrolipoamide dehydrogenase. | 0.981 |
LpdA | SEI09288.1 | SAMN05192544_1011209 | SAMN05192544_102056 | Dihydrolipoamide dehydrogenase. | Aminomethyltransferase; Belongs to the GcvT family. | 0.977 |
LpdA | SEI09343.1 | SAMN05192544_1011209 | SAMN05192544_102066 | Dihydrolipoamide dehydrogenase. | Aminomethyltransferase; Belongs to the GcvT family. | 0.978 |
LpdA | SEI09621.1 | SAMN05192544_1011209 | SAMN05192544_1020111 | Dihydrolipoamide dehydrogenase. | N-methylglutamate dehydrogenase subunit C; Belongs to the GcvT family. | 0.848 |
LpdA | SEI24324.1 | SAMN05192544_1011209 | SAMN05192544_105163 | Dihydrolipoamide dehydrogenase. | Dihydrolipoamide dehydrogenase. | 0.983 |
LpdA | gcvH | SAMN05192544_1011209 | SAMN05192544_100143 | Dihydrolipoamide dehydrogenase. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.998 |
LpdA | gcvP | SAMN05192544_1011209 | SAMN05192544_100144 | Dihydrolipoamide dehydrogenase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.982 |
LpdA | gcvT | SAMN05192544_1011209 | SAMN05192544_100142 | Dihydrolipoamide dehydrogenase. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.979 |
LpdA | lipB | SAMN05192544_1011209 | SAMN05192544_1001409 | Dihydrolipoamide dehydrogenase. | Lipoyl(octanoyl) transferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. | 0.691 |
LpdA-2 | LpdA | SAMN05192544_105223 | SAMN05192544_1011209 | Dihydrolipoamide dehydrogenase. | Dihydrolipoamide dehydrogenase. | 0.983 |
LpdA-2 | LpdA-3 | SAMN05192544_105223 | SAMN05192544_107031 | Dihydrolipoamide dehydrogenase. | Dihydrolipoamide dehydrogenase. | 0.910 |
LpdA-2 | SEI09288.1 | SAMN05192544_105223 | SAMN05192544_102056 | Dihydrolipoamide dehydrogenase. | Aminomethyltransferase; Belongs to the GcvT family. | 0.941 |
LpdA-2 | SEI09343.1 | SAMN05192544_105223 | SAMN05192544_102066 | Dihydrolipoamide dehydrogenase. | Aminomethyltransferase; Belongs to the GcvT family. | 0.948 |
LpdA-2 | SEI09621.1 | SAMN05192544_105223 | SAMN05192544_1020111 | Dihydrolipoamide dehydrogenase. | N-methylglutamate dehydrogenase subunit C; Belongs to the GcvT family. | 0.471 |
LpdA-2 | SEI24324.1 | SAMN05192544_105223 | SAMN05192544_105163 | Dihydrolipoamide dehydrogenase. | Dihydrolipoamide dehydrogenase. | 0.921 |
LpdA-2 | gcvH | SAMN05192544_105223 | SAMN05192544_100143 | Dihydrolipoamide dehydrogenase. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.983 |
LpdA-2 | gcvP | SAMN05192544_105223 | SAMN05192544_100144 | Dihydrolipoamide dehydrogenase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.960 |
LpdA-2 | gcvT | SAMN05192544_105223 | SAMN05192544_100142 | Dihydrolipoamide dehydrogenase. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.952 |
LpdA-2 | lipB | SAMN05192544_105223 | SAMN05192544_1001409 | Dihydrolipoamide dehydrogenase. | Lipoyl(octanoyl) transferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. | 0.498 |
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