STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH46728.1MFS transporter, YNFM family, putative membrane transport protein. (428 aa)    
Predicted Functional Partners:
SEH46739.1
Catechol 2,3-dioxygenase.
       0.709
SEH54475.1
Predicted arabinose efflux permease, MFS family.
  
     0.598
SEH46715.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.557
SEI26996.1
Predicted arabinose efflux permease, MFS family.
  
     0.543
SEI26108.1
Predicted arabinose efflux permease, MFS family.
  
     0.510
SEI25529.1
Predicted arabinose efflux permease, MFS family.
  
     0.506
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.