STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HpnDFarnesyl-diphosphate farnesyltransferase. (282 aa)    
Predicted Functional Partners:
SEH53553.1
Squalene-associated FAD-dependent desaturase.
   
 0.967
Shc
Squalene-hopene/tetraprenyl-beta-curcumene cyclase.
 
  
 0.953
SEH53575.1
Hopanoid-associated phosphorylase.
 
   
 0.929
SEH53648.1
Hopene-associated glycosyltransferase HpnB.
  
 0.864
SEH81217.1
Phytoene synthase.
  
     0.761
SEI04876.1
Methyltransferase domain-containing protein.
    
 0.746
Gap
Glyceraldehyde-3-phosphate dehydrogenase (NAD+); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.698
SEH53604.1
Hypothetical protein.
 
     0.683
HpnH
Hopanoid biosynthesis associated radical SAM protein HpnH.
 
   
 0.681
SEH53688.1
Dihydroflavonol-4-reductase.
 
 
 0.670
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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