STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH53688.1Dihydroflavonol-4-reductase. (336 aa)    
Predicted Functional Partners:
Shc
Squalene-hopene/tetraprenyl-beta-curcumene cyclase.
 
 
 0.842
SEH53648.1
Hopene-associated glycosyltransferase HpnB.
 
 
 0.800
HpnH
Hopanoid biosynthesis associated radical SAM protein HpnH.
 
   
 0.782
SEI17266.1
Putative membrane protein.
 
     0.772
SEH53604.1
Hypothetical protein.
 
   
 0.769
SEI23173.1
Putative membrane protein.
 
     0.768
SEI28082.1
Putative membrane protein.
 
     0.766
SEH53575.1
Hopanoid-associated phosphorylase.
 
   
 0.764
HpnJ-2
Hopanoid biosynthesis associated radical SAM protein HpnJ.
 
   
 0.753
HpnJ
Hopanoid biosynthesis associated radical SAM protein HpnJ.
 
   
 0.750
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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