STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH56318.1Diguanylate cyclase/phosphodiesterase. (645 aa)    
Predicted Functional Partners:
SEI18166.1
EAL domain-containing protein.
 
  
 0.803
SEI21519.1
EAL domain-containing protein.
 
  
 0.798
SEH48548.1
PAS domain S-box-containing protein.
 
 0.603
SEI26794.1
Diguanylate cyclase/phosphodiesterase.
 
 
0.581
SEI26447.1
Diguanylate cyclase/phosphodiesterase.
 
 
0.564
SEI26326.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
0.558
SEH94635.1
Diguanylate cyclase/phosphodiesterase.
 
 
0.556
SEI20223.1
PAS domain S-box-containing protein.
 
 0.556
SEH59234.1
Diguanylate cyclase/phosphodiesterase.
 
 
0.554
SEI26663.1
EAL and modified HD-GYP domain-containing signal transduction protein.
 
   
 0.545
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.