STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH61567.12-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family. (264 aa)    
Predicted Functional Partners:
GudD
D-glucarate dehydratase.
 
 
 0.964
KdgD
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
    
  0.931
GarD
Galactarate dehydratase.
 
 
  0.930
SEH39874.1
2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.912
KdgD-2
5-dehydro-4-deoxyglucarate dehydratase.
    
  0.902
SEH61584.1
2-hydroxy-3-oxopropionate reductase.
  
 
 0.839
HpaH
2-oxohept-3-enedioate hydratase.
  
 0.828
Hyi-2
Hydroxypyruvate isomerase; Belongs to the hyi family.
     
 0.804
Hyi
Hydroxypyruvate isomerase; Belongs to the hyi family.
    
  0.802
Gcl
Tartronate-semialdehyde synthase; Belongs to the TPP enzyme family.
     
  0.800
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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