STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssaRType III secretion protein R. (218 aa)    
Predicted Functional Partners:
SEH64563.1
Type III secretion protein S.
 
 
 0.995
SEH64357.1
Type III secretion protein T.
 
 
 0.995
SEH64496.1
Type III secretion protein V.
 
 
 0.993
SEH64436.1
Type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
 
 0.989
SEH64479.1
Type III secretion protein U.
 
 
 0.948
SEH64528.1
Type III secretion protein Q.
 
  
 0.946
SEI26578.1
Flagellar motor switch protein FliN/FliY.
 
  
 0.933
SEH64391.1
ATP synthase in type III secretion protein N.
 
  
 0.923
FliI
Flagellum-specific ATP synthase.
 
  
 0.884
flhB
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
 
 
 0.881
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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