Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HolB | SEH80589.1 | SAMN05192544_100941 | SAMN05192544_100938 | DNA polymerase III, delta prime subunit. | Hypothetical protein. | 0.562 |
HolB | SEH80604.1 | SAMN05192544_100941 | SAMN05192544_100939 | DNA polymerase III, delta prime subunit. | TatD DNase family protein. | 0.756 |
HolB | SEH80620.1 | SAMN05192544_100941 | SAMN05192544_100940 | DNA polymerase III, delta prime subunit. | Phosphinothricin acetyltransferase. | 0.675 |
HolB | dnaX | SAMN05192544_100941 | SAMN05192544_1009143 | DNA polymerase III, delta prime subunit. | DNA polymerase-3 subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.994 |
HolB | mltG | SAMN05192544_100941 | SAMN05192544_100943 | DNA polymerase III, delta prime subunit. | UPF0755 protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. | 0.760 |
HolB | pheS | SAMN05192544_100941 | SAMN05192544_101135 | DNA polymerase III, delta prime subunit. | phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.553 |
HolB | prfA | SAMN05192544_100941 | SAMN05192544_11128 | DNA polymerase III, delta prime subunit. | Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.458 |
HolB | tmk | SAMN05192544_100941 | SAMN05192544_100942 | DNA polymerase III, delta prime subunit. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.892 |
SEH80589.1 | HolB | SAMN05192544_100938 | SAMN05192544_100941 | Hypothetical protein. | DNA polymerase III, delta prime subunit. | 0.562 |
SEH80589.1 | SEH80604.1 | SAMN05192544_100938 | SAMN05192544_100939 | Hypothetical protein. | TatD DNase family protein. | 0.700 |
SEH80589.1 | SEH80620.1 | SAMN05192544_100938 | SAMN05192544_100940 | Hypothetical protein. | Phosphinothricin acetyltransferase. | 0.505 |
SEH80589.1 | tmk | SAMN05192544_100938 | SAMN05192544_100942 | Hypothetical protein. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.466 |
SEH80604.1 | HolB | SAMN05192544_100939 | SAMN05192544_100941 | TatD DNase family protein. | DNA polymerase III, delta prime subunit. | 0.756 |
SEH80604.1 | SEH80589.1 | SAMN05192544_100939 | SAMN05192544_100938 | TatD DNase family protein. | Hypothetical protein. | 0.700 |
SEH80604.1 | SEH80620.1 | SAMN05192544_100939 | SAMN05192544_100940 | TatD DNase family protein. | Phosphinothricin acetyltransferase. | 0.640 |
SEH80604.1 | adk | SAMN05192544_100939 | SAMN05192544_10242 | TatD DNase family protein. | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.516 |
SEH80604.1 | dnaX | SAMN05192544_100939 | SAMN05192544_1009143 | TatD DNase family protein. | DNA polymerase-3 subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.517 |
SEH80604.1 | mltG | SAMN05192544_100939 | SAMN05192544_100943 | TatD DNase family protein. | UPF0755 protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. | 0.727 |
SEH80604.1 | pheS | SAMN05192544_100939 | SAMN05192544_101135 | TatD DNase family protein. | phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.542 |
SEH80604.1 | prfA | SAMN05192544_100939 | SAMN05192544_11128 | TatD DNase family protein. | Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.516 |
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