STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH87828.1Protein of unknown function. (66 aa)    
Predicted Functional Partners:
SEH87843.1
Uncharacterized membrane protein YccC.
 
   
 0.952
SEH87815.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.895
SEH87852.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
   
 0.881
SEH74609.1
Uncharacterized membrane protein YccC.
 
   
 0.794
SEI25768.1
Uncharacterized membrane protein YccC.
 
   
 0.794
SEI18312.1
Uncharacterized membrane protein YccC.
 
   
 0.755
SEI28498.1
Outer membrane porin, OprD family.
  
     0.733
GspL
General secretion pathway protein L.
  
     0.696
SEI23570.1
FimV C-terminal domain-containing protein.
  
     0.677
SEH87866.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.670
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
Server load: low (14%) [ZH]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.