STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI01103.1Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. (387 aa)    
Predicted Functional Partners:
SEI01093.1
enoyl-CoA hydratase.
    
 0.780
SEI01115.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit.
       0.773
SEI01122.1
Ferredoxin, 2Fe-2S.
  
  
 0.678
SEI01132.1
acyl-CoA thioesterase-2.
     
 0.655
SEI01086.1
Phenylacetaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
   0.611
SEI01080.1
Acyl-CoA dehydrogenase.
 
 
 0.580
SEI01144.1
crotonobetaine/carnitine-CoA ligase.
     
 0.549
SEI01068.1
Gentisate 1,2-dioxygenase.
       0.457
SEI01197.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
 
    
0.401
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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