STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI02566.1Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family. (269 aa)    
Predicted Functional Partners:
SEI02555.1
Surface antigen.
 
   
 0.847
SEH86613.1
Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family.
  
     0.711
SEI02577.1
Hypothetical protein.
 
     0.621
SEI27877.1
Hypothetical protein/toxin CptA.
  
     0.615
SEI27426.1
Hypothetical protein.
  
     0.605
SEH77002.1
Type VI secretion system protein ImpL.
  
     0.540
SEH77030.1
Type VI secretion system protein.
  
     0.512
SEH77065.1
Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.
  
     0.493
SEI22935.1
Quinol monooxygenase YgiN.
  
     0.445
SEI20589.1
Hypothetical protein.
  
     0.434
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.