STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI04168.1Permease of the drug/metabolite transporter (DMT) superfamily. (325 aa)    
Predicted Functional Partners:
SEI04176.1
Hypothetical protein.
       0.773
SEI04185.1
Succinyldiaminopimelate aminotransferase apoenzyme.
 
   
 0.694
SEH53372.1
Site-specific recombinase XerD.
  
     0.594
SEI10660.1
Uncharacterized membrane protein YhfC.
  
     0.575
SEI13881.1
Hypothetical protein.
  
     0.570
SEI25895.1
DMSO reductase anchor subunit.
  
     0.519
smc
Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
       0.513
SEH92343.1
c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains.
  
     0.511
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
  
    0.494
SEI25575.1
Protein of unknown function.
 
     0.487
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.