Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEH55028.1 | SEH55149.1 | SAMN05192544_1003306 | SAMN05192544_1003314 | MbtH protein. | Amino acid adenylation domain-containing protein. | 0.978 |
SEH55028.1 | SEI04629.1 | SAMN05192544_1003306 | SAMN05192544_101789 | MbtH protein. | Major Facilitator Superfamily protein. | 0.765 |
SEH55149.1 | SEH55028.1 | SAMN05192544_1003314 | SAMN05192544_1003306 | Amino acid adenylation domain-containing protein. | MbtH protein. | 0.978 |
SEH55149.1 | SEI04629.1 | SAMN05192544_1003314 | SAMN05192544_101789 | Amino acid adenylation domain-containing protein. | Major Facilitator Superfamily protein. | 0.688 |
SEI04629.1 | SEH55028.1 | SAMN05192544_101789 | SAMN05192544_1003306 | Major Facilitator Superfamily protein. | MbtH protein. | 0.765 |
SEI04629.1 | SEH55149.1 | SAMN05192544_101789 | SAMN05192544_1003314 | Major Facilitator Superfamily protein. | Amino acid adenylation domain-containing protein. | 0.688 |
SEI04629.1 | SEI23552.1 | SAMN05192544_101789 | SAMN05192544_104841 | Major Facilitator Superfamily protein. | DedD protein. | 0.588 |
SEI04629.1 | SEI25019.1 | SAMN05192544_101789 | SAMN05192544_105562 | Major Facilitator Superfamily protein. | Protein of unknown function. | 0.644 |
SEI04629.1 | SEI27859.1 | SAMN05192544_101789 | SAMN05192544_109914 | Major Facilitator Superfamily protein. | Hypothetical protein. | 0.652 |
SEI04629.1 | flhC-2 | SAMN05192544_101789 | SAMN05192544_1020123 | Major Facilitator Superfamily protein. | Flagellar transcriptional activator FlhC; Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhC family. | 0.591 |
SEI04629.1 | flhC-3 | SAMN05192544_101789 | SAMN05192544_107215 | Major Facilitator Superfamily protein. | Flagellar transcriptional activator FlhC; Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhC family. | 0.585 |
SEI04629.1 | flhD | SAMN05192544_101789 | SAMN05192544_100114 | Major Facilitator Superfamily protein. | Flagellar transcriptional activator FlhD; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family. | 0.659 |
SEI04629.1 | flhD-2 | SAMN05192544_101789 | SAMN05192544_1020122 | Major Facilitator Superfamily protein. | Flagellar transcriptional activator FlhD; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family. | 0.660 |
SEI04629.1 | flhD-3 | SAMN05192544_101789 | SAMN05192544_107216 | Major Facilitator Superfamily protein. | Flagellar transcriptional activator FlhD; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family. | 0.622 |
SEI23552.1 | SEI04629.1 | SAMN05192544_104841 | SAMN05192544_101789 | DedD protein. | Major Facilitator Superfamily protein. | 0.588 |
SEI23552.1 | SEI25019.1 | SAMN05192544_104841 | SAMN05192544_105562 | DedD protein. | Protein of unknown function. | 0.642 |
SEI23552.1 | SEI27859.1 | SAMN05192544_104841 | SAMN05192544_109914 | DedD protein. | Hypothetical protein. | 0.434 |
SEI23552.1 | flhD | SAMN05192544_104841 | SAMN05192544_100114 | DedD protein. | Flagellar transcriptional activator FlhD; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family. | 0.442 |
SEI23552.1 | flhD-2 | SAMN05192544_104841 | SAMN05192544_1020122 | DedD protein. | Flagellar transcriptional activator FlhD; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family. | 0.442 |
SEI25019.1 | SEI04629.1 | SAMN05192544_105562 | SAMN05192544_101789 | Protein of unknown function. | Major Facilitator Superfamily protein. | 0.644 |
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