STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI09189.1hydroxymethylglutaryl-CoA lyase; Belongs to the alpha-IPM synthase/homocitrate synthase family. (315 aa)    
Predicted Functional Partners:
SEI24858.1
methylglutaconyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.959
SEI16917.1
acetoacetyl-CoA synthetase.
 
 
 0.942
SEI11852.1
Enoyl-CoA hydratase/carnithine racemase.
 
 0.935
SEH88129.1
3-oxoacid CoA-transferase subunit A.
  
 
 0.926
SEH88144.1
3-oxoacid CoA-transferase subunit B.
  
 
 0.924
SEI25728.1
Acetoacetate decarboxylase.
  
  
  0.911
SEH93151.1
Acetoacetate decarboxylase.
     
  0.900
SEH85606.1
3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit.
  
  
 0.836
SEI25772.1
succinyl-CoA:acetate CoA-transferase.
    
 0.817
SEI26421.1
2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
     
 0.810
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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