STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI16046.12-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway). (287 aa)    
Predicted Functional Partners:
SEI16042.1
Predicted arabinose efflux permease, MFS family.
       0.709
SEI16038.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
  
    0.543
SEI16035.1
2,3-dihydroxy-p-cumate/2,3-dihydroxybenzoate 3,4-dioxygenase.
     
 0.541
SEI16032.1
Resorcinol 4-hydroxylase oxygenase subunit.
  
  
 0.514
SEI16058.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
    
0.456
SEI16051.1
CDP-4-dehydro-6-deoxyglucose reductase.
     
 0.443
SEI16028.1
Aminocarboxymuconate-semialdehyde decarboxylase.
  
    0.406
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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