STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI18150.1Two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB. (627 aa)    
Predicted Functional Partners:
SEI18153.1
Two component, sigma54 specific, transcriptional regulator, Fis family.
 0.991
SEH42435.1
Two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family.
 0.963
SEH42425.1
Histidine kinase.
  
  
 
0.917
SEI26173.1
Signal transduction histidine kinase.
 
 
0.621
SEI28625.1
PAS domain S-box-containing protein.
 
 
0.612
SEH41373.1
PAS domain S-box-containing protein.
  
 
0.583
SEI20223.1
PAS domain S-box-containing protein.
 
 
0.575
SEH48548.1
PAS domain S-box-containing protein.
 
 
0.563
SEI18148.1
Citrate carrier protein, CCS family.
 
     0.559
SEI27955.1
Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
 
    0.547
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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