STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI22105.1Hypothetical protein. (476 aa)    
Predicted Functional Partners:
SEI22107.1
pRiA4b ORF-3-like protein.
 
     0.820
SEI22615.1
Hypothetical protein.
  
     0.529
SEI28496.1
Putative transposase.
  
     0.475
SEI28444.1
DDE domain-containing protein.
  
     0.467
SEI28427.1
Transposase (or an inactivated derivative).
  
     0.464
SEI20255.1
DDE domain-containing protein.
  
     0.460
SEI21980.1
Transposase (or an inactivated derivative).
  
     0.455
SEI27201.1
Transposase (or an inactivated derivative).
  
     0.455
SEI28420.1
Transposase (or an inactivated derivative).
  
     0.454
SEI26202.1
DDE domain-containing protein.
  
     0.452
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.