STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI26326.1Diguanylate cyclase (GGDEF) domain-containing protein. (499 aa)    
Predicted Functional Partners:
SEH48548.1
PAS domain S-box-containing protein.
 
 
0.884
SEH41342.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
 
 0.875
SEI26535.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
  
 0.867
SEI23373.1
PAS domain S-box-containing protein.
 
 
 0.857
SEH41354.1
Signal transduction histidine kinase.
 
 
 0.839
SEH52876.1
Multi-sensor hybrid histidine kinase.
  
  
 0.827
SEH41537.1
Diguanylate cyclase/phosphodiesterase.
 
  
 0.820
SEI23236.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
  
 0.820
SEI22037.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
  
 0.817
SEI21517.1
Diguanylate phosphodiesterase.
 
  
 0.816
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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